+1 on the "rip it all out" advice.
Having said that: A couple of guys on diymobileaudio.com are running the 2" Aura extended range driver in the upper opening. (
LINKIE) With a '99, you can stuff 8's in the lower door opening. Of course, with a combination of drivers like that, you'd probably need active crossovers (and 4 channels of amplification) to get it all dialed in and sounding good.
A decent set of 6 1/2 components - or even just coaxes would powered by a decent 2-ch amp would probably improve the sound over what you have by an order of magnitude...
I put a cheap aftermarket CD-player, an old Soundstream 2-ch amp I had on a shelf, and a sub-$100 set of 6 1/2" components (recommended by several on diymobileaudio) in my '96. Total investment ~$200. MUCH better than factory sound. It won't win any awards, but it sounds good and I don't worry about anyone wanting to steal any of it. The one thing I'm less than happy with is tweeter placement - I put the new tweeter in the factory housing for a stealthy install, and it's a bad location. NBs are a little better than NAs for this, though.