Oh boy, do I really want to post this?
I agree with Mr. BRG that you will have to address every system on the car, and here's why.
Let me start by saying I'm not an expert, but I'm on my 3rd Miata. On my first ('90 Miata), I bought a Begi 4.2 kit for my 1.6L with no electronics. It was putting out between 160-170rwhp , and I think about 145 lbs. of tq. From day one the clutch wouldn't hold over 4500 rpm, so within a couple of weeks I installed a H/D ACT clutch in December. System was fine until May or June. I had trouble running the A/C without the car wanting to overheat. So next came an Aluminum Racing Radiator and a ton of work trying to duct air into and out-of the radiator. I still had over heating issues, so I bought a pair of Spal fans and a lower temp t-stat. After that, the only time I had over heating troubles was when I auto-crossed in the summer and we did hot laps.
Then came my '97 with the early FMII Turbo (now JonWag's car) already installed with about $14,000 worth of upgrades to suspension, transmission, clutch, cooling and engine. This car should be putting down between 205-240rwhp and needed ducting and SPAL fans. This car also liked to over-heat. Once I added SPALs and ducted the cooling air, the car quit overheating, unless I hot lapped at an Auto-x.
I never took either car to the track for many reasons, one of those reasons was because I was confident the car would over-heat when running several laps at full bore. I don't know what Mr. BRG is doing to keep his car from over-heating when he is hot lapping his car, but it must be working.
BTW, during my ownership of both turbo'd cars I had to replace broken transmissions three times, due to the added hp, thus going back to all systems will need attention even for a modest 70 hp gain.
Also, in my opinion, I'd rather have a supercharged car for auto-x than the turbo. I find it a challenge to drive them fast as the power comes on either too slow from bogging or too fast causing traction issues. Whereas, superchargers are much smoother in laying down the power and are easier to predict. That said, I have no experience with actual racing so I'll let those experts give their opinions on which is better.
Another consideration when choosing which computer to use, is that any 1996 or later car will now fail emissions if the ODBII port doesn't properly talk to the emmission testing machine. This is a new law that went into effect in September of '08. In the past if the ODBII wouldn't talk to the testing machine, we were able to advance the car to a dyno test; this is no longer an option!