Difference that big is definitely setup, not wiring.
Have you measured the LC-2 output with a multimeter? The LC-2 output to the MSPNP is configurable using Innovate SW. That's where I would start and then move on to the MSPNP after that (i.e., make sure you know exactly what voltage the LC-2 is putting out).
I'm in Granbury if you want help this weekend (you bought a roll bar from me). I have direct experience with LC-1 and MSPNP Gen 1, but I don't think what you have is too different.